LukasBuecherl
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de957827df
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Rename main.yml to dockerbuild.yml
Changed Action name
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2022-01-18 12:43:38 -07:00 |
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LukasBuecherl
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49892df720
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Create main.yml
action to create docker image
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2022-01-18 12:42:37 -07:00 |
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Chris Myers
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82c020dddb
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Fix bug with meta ids
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2021-11-30 18:19:36 -07:00 |
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Chris Myers
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a1259bb46a
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Removed test file
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2021-10-18 14:40:05 -06:00 |
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Chris Myers
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22e9c0524f
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Update version
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2021-07-17 10:41:33 -06:00 |
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Chris Myers
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4e0ba0a797
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Fixes #617
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2021-07-17 10:32:19 -06:00 |
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Chris Myers
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095ba7c0aa
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Update
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2021-06-24 20:06:34 -06:00 |
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Chris Myers
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d8ea1fc3a0
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Add staging
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2021-06-24 20:03:50 -06:00 |
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Chris Myers
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ef84149733
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Update combine archive
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2021-06-24 19:51:02 -06:00 |
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Chris Myers
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5a9ef3f65d
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Update combine archive in pom
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2021-06-24 19:49:46 -06:00 |
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Chris Myers
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2344c68d25
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Updated pom file
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2021-06-24 19:43:04 -06:00 |
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Chris Myers
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fe229873e7
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Updated pom files
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2021-06-24 19:34:08 -06:00 |
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Chris Myers
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2a7cc317e5
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Update rostock mvn repo
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2021-06-23 11:46:05 -06:00 |
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cjmyers
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ffccbd38f7
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Merge pull request #616 from MyersResearchGroup/Hierachy_Issue
Fixed nullpointerexception in FileTree that resulted in bug when using
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2021-04-21 08:54:00 -06:00 |
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LukasBuecherl
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d518ac2f46
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Fixed nullpointerexception in FileTree that resulted in bug when using
the collapse/expand hierachy in the project overview.
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2021-04-14 14:44:40 -06:00 |
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Chris Myers
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f153c326ee
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Merge branch 'master' of https://github.com/MyersResearchGroup/iBioSim.git
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2021-03-18 13:35:14 -06:00 |
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Chris Myers
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7daeb1d51f
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Skip generating flat SBML when importing archive
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2021-03-18 13:34:55 -06:00 |
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LukasBuecherl
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fc18b0f714
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Add files via upload
Updated readme file with clear installation instructions
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2021-03-11 15:00:43 -07:00 |
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Chris Myers
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8b24d5dd7c
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Remove old biomodels library
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2021-01-13 16:09:53 -07:00 |
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Chris Myers
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e9fa5e478c
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Merge branch 'master' of https://github.com/MyersResearchGroup/iBioSim.git
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2020-10-23 17:20:53 -06:00 |
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Chris Myers
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6a39d140bc
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Missing javadoc comment
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2020-10-23 17:20:26 -06:00 |
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cjmyers
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8e306406dd
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Merge pull request #610 from giarve/master
Add CI Maven build with GitHub Actions and iBioSim.jar as a downloadable artifact
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2020-09-28 13:58:16 -06:00 |
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Gil
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073a6435e7
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Add CI with GH Actions and iBioSim.jar as artifact
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2020-09-27 22:48:07 +02:00 |
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Chris Myers
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24423a0826
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Remove JSBML dependency
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2020-09-10 16:44:07 -06:00 |
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Chris Myers
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e8cde0e3ab
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Update to SBML Level 3 Version 2
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2020-07-10 12:07:35 -06:00 |
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Chris Myers
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df9ed4e1f4
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Change SBOLDesigner version
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2020-05-12 09:39:19 -06:00 |
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Chris Myers
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515c7634a2
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Remove objects with same displayId before creating new
Fix run deadlock on errors
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2020-05-10 13:37:36 -06:00 |
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Chris Myers
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ca58aa4f9d
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Fixed an issue with math flattening
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2020-04-12 15:17:45 -06:00 |
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Chris Myers
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896b33ca3b
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Fix for null pointer sBase
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2020-04-12 11:36:12 -06:00 |
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Chris Myers
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cd24e4b7f9
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Fixed a couple bugs with updating stoichiometry
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2020-04-05 17:02:07 -06:00 |
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Chris Myers
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b6302938aa
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Merge branch 'master' of https://github.com/MyersResearchGroup/iBioSim.git
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2020-04-02 10:37:38 -06:00 |
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Chris Myers
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c7fd0f5ead
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Updated pointer to manual
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2020-04-02 10:37:25 -06:00 |
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Pedro Fontanarrosa
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9081123a7a
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Fixed tandem promoter bug
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2020-02-12 16:14:59 -03:00 |
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Fontanapink
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31dbf38cfd
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Merge pull request #597 from MyersResearchGroup/RoadBlocking
Road-blocking
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2020-02-12 15:00:34 -03:00 |
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Chris Myers
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f90340d965
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Fixes to PR #594 for OAuth
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2020-02-01 13:01:42 -07:00 |
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Chris Myers
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ab8c49aab4
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Reverted bug submission for now
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2020-01-29 18:34:35 -07:00 |
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cjmyers
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4011273959
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Merge pull request #594 from MyersResearchGroup/bug-reporting
Update bug reporting
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2020-01-29 17:28:17 -08:00 |
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Zach Zundel
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2b2e32d3bb
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New token
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2020-01-29 13:08:22 -08:00 |
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Zach Zundel
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25c35a8643
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update bug reporting
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2020-01-29 13:01:54 -08:00 |
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Pedro Fontanarrosa
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96d3e8e738
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Removed TODO tags
Removed TODO tags
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2020-01-22 20:01:09 -03:00 |
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Pedro Fontanarrosa
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7c2074fbfb
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Ordered promoters
Added code to check order of tandem promoters, so that the roadblocking effect is in the correct promoter
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2020-01-18 19:13:00 -03:00 |
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Pedro Fontanarrosa
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e0b7c2a22f
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Sensor Promoter Roadblock effect
Added alpha and beta roadblocking effect for when sensor promoter is the downstream promoter
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2020-01-17 15:46:50 -03:00 |
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Pedro Fontanarrosa
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62a2411a49
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Updated code to have promoters listed in order
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2020-01-16 11:06:59 -03:00 |
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Pedro Fontanarrosa
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97d125c54f
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Updated createCelloProductionKineticLaw
This update adds roadblocking effects to when creating the kinetic model of the genetic circuit. This is only added if there are 2 tandem promoters.
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2020-01-11 10:03:20 -03:00 |
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Pedro Fontanarrosa
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4f86b52eee
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Updated promoterInteractions method
This update retrieves alpha and beta parameters from sensor gate
interactions
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2020-01-11 09:59:48 -03:00 |
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Pedro Fontanarrosa
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1d53561bc8
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Fixed bug for default parameters
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2020-01-08 18:26:43 -03:00 |
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Pedro Fontanarrosa
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828ff0dfb5
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Added default parameters for sensor parts
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2019-12-26 17:44:35 -03:00 |
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Chris Myers
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b0103411d6
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Fix editPart parameters
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2019-12-12 10:05:59 -07:00 |
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Fontanapink
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e6b9a2e17e
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Merge pull request #592 from MyersResearchGroup/Default_Parameters
Default parameters
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2019-12-12 10:24:51 -03:00 |
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Pedro Fontanarrosa
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f349ecc3c3
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Added comments that fix line endings
Making it easier to compare files
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2019-12-11 15:58:07 -03:00 |
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