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Author SHA1 Message Date
Pedro Fontanarrosa
ab858c8f3c Comments 2019-12-11 15:55:58 -03:00
Pedro Fontanarrosa
2921359f36 remove spaces 2019-12-07 15:17:54 -03:00
Pedro Fontanarrosa
af24032df5 Introduced default parameters if no other is found for Cello Modeling 2019-12-07 14:46:36 -03:00
Pedro Fontanarrosa
93fcf66a1f Added Global constants for Cello parameters K, n, ymax, ymin, alpha and 
beta
 2019-12-07 13:16:11 -03:00
Tramy Nguyen
522a74d5e2 removed old technology mapping classes related 2019-11-24 18:13:09 -05:00
Tramy Nguyen
db7038a132
Merge pull request #590 from MyersResearchGroup/verilogCompiler 
Verilog compiler
 2019-11-24 17:57:36 -05:00
Tramy Nguyen
2d61736103 resolved merge conflict for verilogCompiler to master branch 2019-11-24 17:56:26 -05:00
Tramy Nguyen
f9886bb7cf - removed node preselection feature from GUI 2019-11-24 16:45:57 -05:00
Pedro Fontanarrosa
ffc71b1bb4 Update README.md 
Fixed indentation
 2019-11-14 17:23:51 -03:00
Pedro Fontanarrosa
f94355e970 Update README.md 
Added Cello conversion option in readme
 2019-11-14 17:16:01 -03:00
cjmyers
6c3fb95515
Merge pull request #589 from MyersResearchGroup/ModelingGenerator 
Modeling generator
 2019-11-11 16:25:45 -07:00
cjmyers
687471d2b2
Merge branch 'master' into ModelingGenerator 2019-11-11 16:25:06 -07:00
Chris Myers
6dee2c1592 Fix a few issues causing problems with mvn build 2019-11-06 17:13:25 -07:00
Pedro Fontanarrosa
13a41a726e Merge branch 'ModelingGenerator' of https://github.com/MyersResearchGroup/iBioSim into ModelingGenerator 2019-11-06 15:46:43 -03:00
Pedro Fontanarrosa
565ac85d22 Delete .xml 2019-11-06 15:46:03 -03:00
cjmyers
180cc0179e
Merge branch 'master' into ModelingGenerator 2019-11-06 11:36:30 -07:00
Pedro Fontanarrosa
79305aa46d Cleaning up code 2019-11-04 14:58:38 -03:00
Pedro Fontanarrosa
e761635d9e Fixed GUI display 
fixed code that made the pop-up window look weird
 2019-11-04 14:52:31 -03:00
Pedro Fontanarrosa
7ed7c968e7 just space errasing 2019-11-04 12:19:51 -03:00
Pedro Fontanarrosa
e301b76604 Gui option for Cello Modeling 
Added neccesary changes to make cello modeling an option for the user through the Gui interface
 2019-11-01 20:17:16 -03:00
Pedro Fontanarrosa
299bf44d17 added TODOS 2019-10-25 17:34:45 -03:00
Tramy Nguyen
ced01407d3 set up run for tech map to synthesis view 2019-10-01 13:34:49 -06:00
Tramy Nguyen
5458c21eb7 successful run for yosys but not sbol tech. map 2019-09-27 12:56:15 -06:00
Tramy Nguyen
5600b73925 running atacs without successfully running yosys 2019-09-26 15:59:30 -06:00
Tramy Nguyen
4941fa1a83 fixed verilog synthesis view "save" feature 2019-09-25 16:32:59 -06:00
Tramy Nguyen
e3fb409ec2 load verilog synthesis property 2019-09-25 13:26:16 -06:00
Chris Myers
76879e1885 Fix call to editPart 2019-09-21 10:32:22 +01:00
Tramy Nguyen
beb12214bf refactored sbml and sbol tech map 2019-09-16 23:01:26 -06:00
Tramy Nguyen
df19fd5917 created verilog synthesis view 2019-09-16 18:19:38 -06:00
Tramy Nguyen
70e91ff1c5 add verilog file to project tree 2019-09-16 16:22:14 -06:00
Pedro Fontanarrosa
9033eb6869 Merge branch 'ModelingGenerator' of 
https://github.com/MyersResearchGroup/iBioSim.git into ModelingGenerator

Conflicts:
	conversion/src/main/java/edu/utah/ece/async/ibiosim/conversion/CelloModeling.java
	conversion/src/main/java/edu/utah/ece/async/ibiosim/conversion/SBML2SBOL.java
	conversion/src/main/java/edu/utah/ece/async/ibiosim/conversion/SBOL2SBML.java
 2019-09-16 12:03:47 -03:00
Pedro Fontanarrosa
703b6e9e1a This changes are me trying to re-install previous commit before messing 
up
 2019-09-16 11:38:05 -03:00
Chris Myers
c42355ad26 Merge branch 'ModelingGenerator' of https://github.com/MyersResearchGroup/iBioSim.git into ModelingGenerator 2019-09-16 14:13:48 +01:00
Chris Myers
7616cb62de Update SBOLDesigner 2019-09-16 14:13:28 +01:00
Pedro Fontanarrosa
c68526ca98 Change visibility of methods in SBOL2SBML to package 
this is so that CelloModeling.java can use them
 2019-09-13 17:39:36 -03:00
Tramy Nguyen
50ad8f615a ran examples for sequential tech. map 2019-09-09 11:38:25 -06:00
Tramy Nguyen
687680a0d8 techmap solution revision for greedy and exhaustive pt. 2 2019-08-19 02:10:45 -06:00
Tramy Nguyen
37d4545b6d tech map non recursion for exhaustive and greedy 2019-08-18 12:16:34 -06:00
Tramy Nguyen
0b4c8b0273 filter example files 2019-08-07 23:20:34 -06:00
Tramy Nguyen
dbe40b6d3a technology mapping tested for covering 2019-08-07 23:20:07 -06:00
Pedro Fontanarrosa
1ecc671b03 Converter commit 2019-08-07 14:42:28 -03:00
Pedro Fontanarrosa
579794a8c7 Creating measure class toy example for Model Generator 2019-08-07 14:42:28 -03:00
Pedro Fontanarrosa
71a9ae4a38 Updated Converter 
This allows for creation of Top Module with circuit name
 2019-08-07 14:41:51 -03:00
Pedro Fontanarrosa
878d0ff031 Code Cleaning 2019-08-07 14:41:51 -03:00
Pedro Fontanarrosa
507aa6f3f7 Added Java AutoDocs 
CelloModeling removed unnecessary code
 2019-08-07 14:41:50 -03:00
Pedro Fontanarrosa
412c01c44a Option to import Simulation Environment 2019-08-07 14:41:50 -03:00
Pedro Fontanarrosa
a1a86ffdb5 Updated CelloModeling to skip sensorMolecules 
Now the model generator doesn't generate species for sensorMolecules and
removes the relevant MapsTo's that reference them.
 2019-08-07 14:41:50 -03:00
Pedro Fontanarrosa
1703505fcc Removed unnecessary code 2019-08-07 14:41:49 -03:00
Pedro Fontanarrosa
ba1826dd55 Added correct species information for small molecules 
Added correct species information for small molecules
(boundarycondition, substanceunits, etc) in sub-models
 2019-08-07 14:41:49 -03:00
Pedro Fontanarrosa
418e45e39e Updated VPR version from 2.0.14-SNAPSHOT to 2.0.16-SNAPSHOT 
Updated conversion.java to be able to generate VPR model
 2019-08-07 14:41:49 -03:00