krlhBlupine/iBioSim
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Removed TODO tags

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Removed TODO tags
This commit is contained in:
Pedro Fontanarrosa 2020-01-22 20:01:09 -03:00
parent 7c2074fbfb
commit 96d3e8e738
2 changed files with 2 additions and 5 deletions
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1
conversion/src/main/java/edu/utah/ece/async/ibiosim/conversion/CelloModeling.java
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@ -722,7 +722,6 @@ public class CelloModeling {
* @return the hash map with all the parameters found. If there are no Cello parameters, it will return empty "" strings
*/
//TODO PEDRO hasCelloParameters
private static HashMap<String, String> hasCelloParameters(FunctionalComponent promoter){
//Initialize the parameters we are looking for

6
dataModels/src/main/java/edu/utah/ece/async/ibiosim/dataModels/biomodel/parser/BioModel.java
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@ -2034,7 +2034,7 @@ public class BioModel extends CoreObservable{
* @param promoterInteractions the promoter interactions
* @return the reaction
*/
//TODO PEDRO createCelloSDProductionReaction
public Reaction createCelloSDProductionReactions(Species mRNA, String reactionID, String TU, String kSDdegrad, boolean onPort, String[] dimensions, BioModel targetModel, List <String> promoters, HashMap<String, HashMap <String, String>> promoterInteractions) {
//This method should create a production reaction for the mRNA that is transcribed from the TU.
@ -2167,7 +2167,7 @@ public class BioModel extends CoreObservable{
* @param dimensions the dimensions
* @return the reaction
*/
//TODO PEDRO createCelloTFProductionReaction
public Reaction createCelloTFProductionReactions(Species mRNA, String rxnID, List<Participation> products, HashMap<String, List<String>> celloParameters, String kTFdegrad, String ko,
String kb, String KoStr, String KaoStr, boolean onPort, String[] dimensions) {
@ -2237,7 +2237,6 @@ public class BioModel extends CoreObservable{
* @param dimensions the dimensions
* @return the reaction is the Degradation Reaction being created for this species
*/
//TODO PEDRO createCelloDegradationReaction
public Reaction createCelloDegradationReaction(String s, double kdegrad, boolean onPort, String[] dimensions) {
//createDegradationDefaultParameters();
@ -2306,7 +2305,6 @@ public class BioModel extends CoreObservable{
* @param promoters the promoters
* @return the string
*/
//TODO PEDRO createCelloProductionKineticLaw
public static String createCelloProductionKineticLaw(Reaction reaction, HashMap<String, List<String>> celloParameters, HashMap<String, HashMap <String, String>> promoterInteractions, List <String> promoters, List<String> ordered_promoters) {
String kineticLaw = "";
//boolean activated = false;