1.7 KiB
1.7 KiB
The synthesis package currently performs technology mapping on combinational designs.
How to use it:
After building the executable jar, you need to invoke the following command:
java -jar target/iBioSim-synthesis-3.0.0-SNAPSHOT-jar-with-dependencies.jar [options] input
where
| Required | Description |
|---|---|
| -lf | full path to the library file containing set of genetic gates needed for technology mapping. |
| -sf | full path to the specification file to performing technology mapping. |
| -sbml | perform SBML Technology Mapping |
| -sbol | perform SBOL Technology Mapping |
| -o | name of output file along with full path of where output file will be written to. |
| -osbml | produce solution for technology mapping in SBML format. |
| -osbol | produce solution for technology mapping in SBOL format. |
| Options | Description |
|---|---|
| -p [value] | SBOL URI prefix needed to set the SBOLDocument when converting the technology mapping solution to the desired SBOL or SBML data format. |
| -ld [value] | directory to multiple SBOL or SBML library files |
| -dot [value] | produced SBOL technology mapping solution in dot format. |
Example run for SBML Technology Mapping:
java -jar target/iBioSim-conversion-3.0.0-SNAPSHOT-jar-with-dependencies.jar "-lf", "", "-sf", "", "-sbml", "-osbml", "-o", "src/test/resources/edu/utah/ece/async/ibiosim/synthesis/SBML_Files/sbml_techmap_sol"
Example run for SBOL Technology Mapping:
java -jar target/iBioSim-conversion-3.0.0-SNAPSHOT-jar-with-dependencies.jar