krlhBlupine/iBioSim
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions
iBioSim/docs/OldTutorial/case00987.xml

165 lines
No EOL
8 KiB
XML
Raw Permalink Blame History

<?xml version='1.0' encoding='UTF-8' standalone='no'?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:layout="http://www.sbml.org/sbml/level3/version1/layout/version1" level="3" xmlns:comp="http://www.sbml.org/sbml/level3/version1/comp/version1" comp:required="true" version="1" layout:required="false">
<model id="case00987" name="case00987" metaid="iBioSim1">
<annotation>
</annotation>
<layout:listOfLayouts xmlns:layout="http://www.sbml.org/sbml/level3/version1/layout/version1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<layout:layout layout:id="iBioSim">
<layout:dimensions layout:width="160" layout:height="230" layout:depth="0"/>
<layout:listOfAdditionalGraphicalObjects>
<layout:generalGlyph layout:reference="_E0" layout:id="Glyph___E0">
<layout:boundingBox>
<layout:position layout:x="80" layout:y="140"/>
<layout:dimensions layout:width="75" layout:height="25"/>
</layout:boundingBox>
<layout:listOfReferenceGlyphs>
<layout:referenceGlyph layout:id="Glyph___E0__product__k1" layout:role="product" layout:glyph="Glyph__k1"/>
</layout:listOfReferenceGlyphs>
</layout:generalGlyph>
<layout:generalGlyph layout:reference="k1" layout:id="Glyph__k1">
<layout:boundingBox>
<layout:position layout:x="100" layout:y="200"/>
<layout:dimensions layout:width="30" layout:height="30"/>
</layout:boundingBox>
</layout:generalGlyph>
</layout:listOfAdditionalGraphicalObjects>
<layout:listOfCompartmentGlyphs>
<layout:compartmentGlyph layout:id="Glyph__default_compartment" layout:compartment="default_compartment">
<layout:boundingBox>
<layout:position layout:x="0" layout:y="0"/>
<layout:dimensions layout:width="1070" layout:height="425"/>
</layout:boundingBox>
</layout:compartmentGlyph>
</layout:listOfCompartmentGlyphs>
<layout:listOfSpeciesGlyphs>
<layout:speciesGlyph layout:id="Glyph__A" layout:species="A">
<layout:boundingBox>
<layout:position layout:x="20" layout:y="40"/>
<layout:dimensions layout:width="100" layout:height="30"/>
</layout:boundingBox>
</layout:speciesGlyph>
<layout:speciesGlyph layout:id="Glyph__B" layout:species="B">
<layout:boundingBox>
<layout:position layout:x="40" layout:y="80"/>
<layout:dimensions layout:width="100" layout:height="30"/>
</layout:boundingBox>
</layout:speciesGlyph>
<layout:speciesGlyph layout:id="Glyph__C" layout:species="C">
<layout:boundingBox>
<layout:position layout:x="60" layout:y="120"/>
<layout:dimensions layout:width="100" layout:height="30"/>
</layout:boundingBox>
</layout:speciesGlyph>
</layout:listOfSpeciesGlyphs>
<layout:listOfTextGlyphs>
<layout:textGlyph layout:graphicalObject="Glyph__default_compartment" layout:id="TextGlyph__default_compartment" layout:text="default_compartment">
<layout:boundingBox>
<layout:position layout:x="0" layout:y="0"/>
<layout:dimensions layout:width="1070" layout:height="425"/>
</layout:boundingBox>
</layout:textGlyph>
<layout:textGlyph layout:graphicalObject="Glyph__A" layout:id="TextGlyph__A" layout:text="A">
<layout:boundingBox>
<layout:position layout:x="20" layout:y="40"/>
<layout:dimensions layout:width="100" layout:height="30"/>
</layout:boundingBox>
</layout:textGlyph>
<layout:textGlyph layout:graphicalObject="Glyph__B" layout:id="TextGlyph__B" layout:text="B">
<layout:boundingBox>
<layout:position layout:x="40" layout:y="80"/>
<layout:dimensions layout:width="100" layout:height="30"/>
</layout:boundingBox>
</layout:textGlyph>
<layout:textGlyph layout:graphicalObject="Glyph__C" layout:id="TextGlyph__C" layout:text="C">
<layout:boundingBox>
<layout:position layout:x="60" layout:y="120"/>
<layout:dimensions layout:width="100" layout:height="30"/>
</layout:boundingBox>
</layout:textGlyph>
<layout:textGlyph layout:graphicalObject="Glyph___E0" layout:id="TextGlyph___E0" layout:text="_E0">
<layout:boundingBox>
<layout:position layout:x="80" layout:y="140"/>
<layout:dimensions layout:width="75" layout:height="25"/>
</layout:boundingBox>
</layout:textGlyph>
<layout:textGlyph layout:graphicalObject="Glyph__k1" layout:id="TextGlyph__k1" layout:text="k1">
<layout:boundingBox>
<layout:position layout:x="100" layout:y="200"/>
<layout:dimensions layout:width="30" layout:height="30"/>
</layout:boundingBox>
</layout:textGlyph>
</layout:listOfTextGlyphs>
</layout:layout>
</layout:listOfLayouts>
<listOfCompartments>
<compartment id="default_compartment" constant="true" spatialDimensions="3" sboTerm="SBO:0000410" size="1">
<annotation>
</annotation>
</compartment>
</listOfCompartments>
<listOfSpecies>
<species id="A" constant="false" initialAmount="1" hasOnlySubstanceUnits="true" metaid="iBioSim3" boundaryCondition="false" compartment="default_compartment"/>
<species id="B" constant="false" initialAmount="0" hasOnlySubstanceUnits="true" metaid="iBioSim4" boundaryCondition="false" compartment="default_compartment"/>
<species id="C" constant="false" initialAmount="0" hasOnlySubstanceUnits="true" metaid="iBioSim5" boundaryCondition="false" compartment="default_compartment"/>
</listOfSpecies>
<listOfParameters>
<parameter id="k1" constant="false" metaid="iBioSim2" value="0"/>
</listOfParameters>
<listOfReactions>
<reaction id="fast" metaid="iBioSim6" reversible="true" fast="true">
<listOfReactants>
<speciesReference constant="true" species="A" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference constant="true" species="B" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k1 </ci>
<ci> A </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="slow" metaid="iBioSim7" reversible="true" fast="false">
<listOfReactants>
<speciesReference constant="true" species="B" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference constant="true" species="C" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k1 </ci>
<ci> B </ci>
</apply>
</math>
</kineticLaw>
</reaction>
</listOfReactions>
<listOfEvents>
<event id="_E0" useValuesFromTriggerTime="true">
<trigger persistent="true" initialValue="true">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<gt/>
<csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> t </csymbol>
<cn> 0.99 </cn>
</apply>
</math>
</trigger>
<listOfEventAssignments>
<eventAssignment variable="k1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<cn type="integer"> 1 </cn>
</math>
</eventAssignment>
</listOfEventAssignments>
</event>
</listOfEvents>
</model>
</sbml>
Reference in a new issue View git blame Copy permalink