Chris Myers
515c7634a2
Remove objects with same displayId before creating new
...
Fix run deadlock on errors
2020-05-10 13:37:36 -06:00
Chris Myers
19f7726eb6
Using VPR snapshot now
2018-01-25 16:03:04 -07:00
Chris Myers
ac7b15a1b3
Added readme
2018-01-23 21:04:57 -07:00
Chris Myers
88d58269d4
Removed more local dependencies.
2018-01-20 23:43:55 -07:00
Chris Myers
82ccd186f9
Removed flanagan dependency
...
Removed local copy of jlibsedml
2018-01-20 22:53:35 -07:00
Chris Myers
f2da7f64a8
Reduce non-maven jar dependencies.
...
Fixed some issues with preferences for analysis.
Save iSSA options in SED-ML.
2018-01-17 12:14:08 -07:00
Tramy Nguyen
e59928a41c
resolving merge conflict with converter.java
2017-12-18 11:40:41 -07:00
Tramy Nguyen
d3c07be5f7
updating VPR jar
2017-12-13 16:47:29 -07:00
Chris Myers
88d6a213d5
Don't flatten on errors using libsbml.
2017-10-30 17:46:44 -06:00
Chris Myers
b62912218f
Updated KISAO term for number of runs
...
Changed CombineArchive to use Maven
2017-08-18 10:49:11 -06:00
Tramy Nguyen
b1a236b47a
updated vpr jars with version 2.0.2.jar
2017-07-23 18:02:33 -06:00
Chris Myers
558687b17f
Updated script for startup on mac
...
Changed some gui variables to protected
Add COMBINE archive import support
Turned off validation due to libsbml bug
Fixed bug in deletion metaIds
Update libSBMLj.jar
2017-07-03 22:49:13 -06:00
Tramy Nguyen
413c7d84f4
Replaced VPR jar from 2.0.0 to 2.0.1
2017-06-20 17:42:13 -06:00
Chris Myers
b360c2b85d
Fixed bug in general preferences
...
Disallow complex products in as complex reactants.
Add and extract SBOL file from COMBINE archives.
2017-05-28 12:47:55 -04:00
Tramy Nguyen
9a7d2af6c8
added vpr dependencies to conversion pom.xml
2017-05-14 21:11:15 -06:00
Chris Myers
16af23bd8c
Use Maven for libSBOLj 2.2.1
...
Remove libraries used from Maven
Add partial COMBINE import support
Begin changing preferences input
2017-05-09 13:15:17 -04:00
Chris Myers
177cda05bf
Updated SBOLDesigner.jar
2017-04-30 19:19:45 -04:00
Michael Zhang
77a92ac37c
Merge branch 'master' of
...
https://github.com/MyersResearchGroup/iBioSim.git
Conflicts:
lib/SBOLDesigner.jar
2017-04-30 12:59:44 -06:00
Michael Zhang
658eecb16a
Updated SBOLDesigner.jar
2017-04-30 12:55:39 -06:00
Chris Myers
7396dfc663
Updated SBOLDesigner
2017-04-30 11:21:40 -04:00
Tramy Nguyen
cfa00c90e8
added Goksel's model generator jar to conversion module
2017-04-27 16:58:46 -06:00
Michael Zhang
b90941731c
Incorporated PartEditDialog to Associate SBOL, buggy
2017-04-27 13:35:41 -06:00
Chris Myers
ea91a2a3fe
Update libSBOLj and SBOLDesigner again
2017-04-26 14:05:55 -04:00
Chris Myers
0f04267875
Update libSBOLj and SBOLDesigner
2017-04-26 13:03:41 -04:00
Chris Myers
0114b94bb4
Updated SBOLDesigner and libSBOLj
2017-04-26 12:27:53 -04:00
Chris Myers
d062cfa4e6
Update to libSBOLj 2.2
2017-04-13 23:30:10 +01:00
Tramy Nguyen
d3b01f55fd
added httpclient dependency and new SBOLDesigner.jar
2017-04-04 23:20:47 -06:00
Michael Zhang
2d241ca734
Updated SBOLDesigner.jar with fixes for context in RegistryInputDialog.
2017-03-29 10:54:59 -06:00
Michael Zhang
9ad8e8f74f
Updated SBOLDesigner.jar with new features.
2017-03-28 17:46:05 -06:00
Michael Zhang
87f5981210
Actually fixed the bug with Designer this time.
2017-03-27 15:44:04 -06:00
Michael Zhang
ac70786a7b
Updated SBOLDesigner.jar with bug fixes.
2017-03-27 15:35:57 -06:00
Michael Zhang
6a25093eff
Updated SBOLDesigner.jar with fix for filtering in RootInputDialog.
2017-03-26 21:10:15 -06:00
Michael Zhang
3befd3acb4
Fleshed out RegistryInputDialog: can now import from registries as well
...
as working document.
2017-03-26 20:55:30 -06:00
Chris Myers
57f317e1dc
Updated SBOLDesigner to allow its browser to be used to select parts.
2017-03-23 15:27:18 +00:00
Chris Myers
0ac7d7850a
Updated SBOLDesigner.
2017-03-02 17:03:47 +00:00
Tramy Nguyen
cf9f47cecd
- updated libSBOLj 2.1.2 jar files
...
- modified ModelEditor to use SynBioHub instead of SBOLStack
- inserted SBOLValidate.java into conversion package.
2017-02-28 14:35:16 -07:00
leandrohw
0b9f862d9c
Reverted to e21f079
2017-02-10 00:27:55 -07:00
leandrohw
f6b1e488e8
Merge branch 'master' of
...
https://github.com/MyersResearchGroup/iBioSim.git
2017-02-07 21:46:35 -07:00
Chris Myers
b5daf31823
Add support to submit to SynBioHub
2017-02-01 22:46:42 +00:00
Zach Zundel
f97e85e1ae
More mavenization
2017-01-16 20:04:32 -07:00
Zach Zundel
d067da129e
Merge branch 'master' into mavenize
2017-01-16 15:27:01 -07:00
Zach Zundel
e243707819
Removed most .jars
2017-01-16 15:22:54 -07:00
Zach Zundel
9df0b4b67b
Removed problem old files
2017-01-16 13:08:19 -07:00
Chris Myers
44f3958c16
Added ability to export to an SBOL Stack.
2017-01-16 15:46:54 +00:00
Zach Zundel
bfd58a1ca4
Began mavenization. Removed libSBOlj, batk-*, and antlr libraries.
2017-01-09 11:20:21 -07:00
Chris Myers
e6f1f5b084
Major refactor Part I
2017-01-04 16:32:14 -07:00
