Chris Myers
7e31800319
File separater bug fix?
2017-07-08 16:24:02 -06:00
Chris Myers
8c3f5cb6c5
Revert
2017-07-06 09:19:18 -06:00
Chris Myers
3d60a00070
Changed File.separator for windows
2017-07-05 21:57:46 -06:00
Chris Myers
b2d240f816
Move verification back into iBioSim.
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Update the scripts
Update version to 3.0.0-SNAPSHOT
2017-07-05 16:13:44 -06:00
Chris Myers
558687b17f
Updated script for startup on mac
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Changed some gui variables to protected
Add COMBINE archive import support
Turned off validation due to libsbml bug
Fixed bug in deletion metaIds
Update libSBMLj.jar
2017-07-03 22:49:13 -06:00
leandrohw
e8b3fda1a4
Merge remote-tracking branch 'origin/master' into refactor_run
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Conflicts:
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/simulation/hierarchical/HierarchicalSimulation.java
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/Gui.java
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/analysisView/Run.java
2017-06-21 11:35:46 -06:00
Tramy Nguyen
3d706687f7
modified sbol association
2017-06-12 13:37:51 -06:00
Chris Myers
7d6e182213
Switch back to DNA component for now.
2017-06-09 11:13:45 -06:00
Chris Myers
870a58c960
Refactor out LEMA code
2017-06-09 10:39:00 -06:00
Chris Myers
18d6043722
Fix metaId bug
2017-06-06 21:30:18 -04:00
leandrohw
feccdb2f73
More refactoring.
2017-05-31 11:11:39 -06:00
Leandro
87964e2dfe
Merge remote-tracking branch 'origin/master' into refactor_run
2017-05-12 12:10:39 -06:00
Chris Myers
16af23bd8c
Use Maven for libSBOLj 2.2.1
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Remove libraries used from Maven
Add partial COMBINE import support
Begin changing preferences input
2017-05-09 13:15:17 -04:00
Leandro
8748c3f615
Cleaning up Run
2017-05-04 15:27:50 -06:00
leandrohw
60f190c397
Merge branch 'master' into refactor_run
2017-05-03 11:10:47 -06:00
Tramy Nguyen
099952872a
Remove Associate SBOL button off of Reaction Editor panel.
2017-05-01 10:10:12 -06:00
leandrohw
3cd3bc886e
Updated pom file to use latest snapshot of jsbml.
2017-04-30 17:19:45 -06:00
Chris Myers
f3e493bd9d
Start of redo of preferences.
2017-04-30 10:30:48 -04:00
Chris Myers
0f04267875
Update libSBOLj and SBOLDesigner
2017-04-26 13:03:41 -04:00
Chris Myers
22dc52c547
Merge branch 'master' of https://github.com/MyersResearchGroup/iBioSim.git
2017-04-26 12:28:01 -04:00
Chris Myers
0114b94bb4
Updated SBOLDesigner and libSBOLj
2017-04-26 12:27:53 -04:00
leandrohw
5c9ab3d64a
Separated execute in Run into many smaller methods.
2017-04-25 08:25:10 -06:00
Tramy Nguyen
0b4bc1187e
Set up buttons for technology mapping
2017-04-23 16:13:05 -06:00
Tramy Nguyen
fd3bc89fab
Moved java files from iBioSim-synthesis that handles SBOL data model to
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iBioSim-dataModels sbol package.
2017-04-17 14:35:48 -06:00
leandrohw
0c7ace6f1d
Fixed package name from biosim to ibiosim.
2017-04-17 11:07:55 -06:00
leandrohw
18236018a9
Added biosim prefix to package names
2017-04-17 11:04:48 -06:00
Chris Myers
d3220ceb84
Refactor code from data models to verification
2017-04-17 17:05:33 +01:00
Chris Myers
0e3ae9e841
Refactor
2017-04-17 16:23:01 +01:00
Tramy Nguyen
e9ece162d7
renamed SBOL jar dependency in pom file.
2017-04-13 17:22:07 -06:00
Chris Myers
2e698dd72d
Update .gitignores
2017-04-13 23:33:26 +01:00
Chris Myers
771a75f41a
Merge branch 'master' of https://github.com/MyersResearchGroup/iBioSim.git
2017-04-13 23:30:19 +01:00
Chris Myers
d062cfa4e6
Update to libSBOLj 2.2
2017-04-13 23:30:10 +01:00
Tramy Nguyen
5b661bce28
Renamed frontend to gui and updated package names to convention
2017-04-13 16:09:28 -06:00
leandrohw
16ce785850
Attached javadoc/sources for libSBOLj
2017-04-03 12:46:01 -06:00
leandrohw
3565f5257a
Merge branch 'master' into newStructure
2017-04-03 10:10:39 -06:00
Tramy Nguyen
8c349e99d5
moved technology mapping frontend menu to synthesis view method option.
2017-03-31 19:51:57 -06:00
leandrohw
a86c1989e1
resolved some pending dependencies and reestructured package names
2017-03-29 08:33:19 -06:00
leandrohw
1f13f73093
Updated pom file to install dependencies upon clean rather than using
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system reference
2017-03-28 10:33:18 -06:00
leandrohw
80c913a851
Cleaned up pom files
2017-03-28 10:04:06 -06:00
leandrohw
cb7546322a
Resolved pending dependencies and refactoring in dataModels
2017-03-27 14:28:28 -06:00
Leandro
7c120e55a5
added dependencies among sibling projects
2017-03-26 21:40:33 -06:00
Leandro
e3238c8c33
Made some fixes in the package naming
2017-03-26 21:07:59 -06:00
leandrohw
e9c8fa4641
added pom files for children modules
2017-03-26 20:36:49 -06:00
leandrohw
f9643310a7
Fixed errors in dataModels
2017-03-26 18:58:03 -06:00
Tramy Nguyen
01db08e023
restructured frontend and dataModels package
2017-03-26 18:26:19 -06:00
