Chris Myers
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d4d40a9084
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Merge branch 'master' of https://github.com/MyersResearchGroup/iBioSim
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2024-11-26 20:28:24 -07:00 |
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Chris Myers
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b11268ec9c
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Updated to suppot later Java versions
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2024-11-26 20:27:58 -07:00 |
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cjmyers
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484ae5d58e
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Merge branch 'master' into sbml-to-prism
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2023-03-28 08:57:59 -06:00 |
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LukasBuecherl
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4944baf71b
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Run.java update
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2022-09-21 08:53:50 -06:00 |
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Chris Myers
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518bbc1383
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Update jsbml
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2022-05-19 06:37:25 -06:00 |
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Chris Myers
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c4ac7ea0ed
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Added debug
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2022-04-20 16:41:17 -06:00 |
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Chris Myers
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7672cd24b9
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Added stub code
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2022-03-31 15:31:04 -06:00 |
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Chris Myers
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5a9ef3f65d
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Update combine archive in pom
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2021-06-24 19:49:46 -06:00 |
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Chris Myers
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2344c68d25
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Updated pom file
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2021-06-24 19:43:04 -06:00 |
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Chris Myers
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2a7cc317e5
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Update rostock mvn repo
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2021-06-23 11:46:05 -06:00 |
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Chris Myers
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7daeb1d51f
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Skip generating flat SBML when importing archive
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2021-03-18 13:34:55 -06:00 |
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Chris Myers
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e8cde0e3ab
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Update to SBML Level 3 Version 2
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2020-07-10 12:07:35 -06:00 |
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Chris Myers
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515c7634a2
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Remove objects with same displayId before creating new
Fix run deadlock on errors
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2020-05-10 13:37:36 -06:00 |
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Chris Myers
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6dee2c1592
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Fix a few issues causing problems with mvn build
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2019-11-06 17:13:25 -07:00 |
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Chris Myers
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70cb07da11
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Addresses issue with not simulating from properties file correctly.
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2018-11-11 16:03:47 +00:00 |
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leandrohw
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564c8ff9b0
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Fixed arrays in ode simulator
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2018-09-04 09:44:44 -06:00 |
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leandrohw
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7f17a11c85
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Some Javadoc
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2018-08-22 13:42:54 -06:00 |
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leandrohw
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9646657077
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Fixed a problem with selector
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2018-08-16 19:53:49 -06:00 |
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leandrohw
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c402c77524
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Fixed a problem with has enough molecules
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2018-08-16 00:55:37 -06:00 |
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leandrohw
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da72d6ffc8
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Made some changes to reaction selection.
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2018-08-15 00:07:39 -06:00 |
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leandrohw
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48506e1768
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Fixed arrays of assignments
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2018-08-13 23:41:09 -06:00 |
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leandrohw
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957979b262
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Fixed array of reactions
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2018-08-13 03:12:06 -06:00 |
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leandrohw
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659c7e8128
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Added code for iterating through array nodes.
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2018-08-09 16:18:18 -06:00 |
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leandrohw
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d22b4befae
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Added missing part for reachability-analysis.
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2018-08-06 23:20:53 -06:00 |
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leandrohw
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d6f6080440
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Added indeterminate to progress bar if it's not running time course
simulation.
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2018-08-06 23:06:58 -06:00 |
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leandrohw
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4574295034
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Fixed issue with total propensity
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2018-07-30 23:27:52 -06:00 |
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leandrohw
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fcb546b53c
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Improved replacements
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2018-07-30 20:56:39 -06:00 |
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leandrohw
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803bf37cc9
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check for null on observer parent.
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2018-07-27 11:27:27 -06:00 |
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leandrohw
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a26bad98cd
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Fixed rateof for concentration species
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2018-07-25 14:53:58 -06:00 |
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leandrohw
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ea6ec675d1
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Fixed some issues with reaction ids in math.
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2018-07-25 10:08:35 -06:00 |
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leandrohw
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eda190012d
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Better modularization of hierarchical models.
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2018-07-24 23:23:27 -06:00 |
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leandrohw
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f921a990fb
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Fixed rateOf after some changes that broke the function.
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2018-07-22 23:38:44 -06:00 |
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leandrohw
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14063ed407
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Some refactoring and fixes on simulator
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2018-07-18 16:24:42 -06:00 |
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leandrohw
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a55921fd97
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Made some fixes for comp models
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2018-07-15 13:33:16 -06:00 |
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leandrohw
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7e7f72d46a
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Fixed a couple issues that was detected by the test suite.
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2018-07-08 16:51:25 -06:00 |
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leandrohw
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121192a557
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Adjusted has only substance units.
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2018-07-02 14:59:56 -06:00 |
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leandro
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0f6d37f90e
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Moved location of hierarchical model
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2018-07-01 18:42:58 -06:00 |
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leandrohw
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9dc78c6733
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Added getValue for nodes
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2018-07-01 17:58:07 -06:00 |
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leandrohw
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5e71600832
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Fixed issue with printing time
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2018-06-27 13:15:48 -06:00 |
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leandrohw
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ec0ea1ec24
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Javadocs for hierarchical simulation
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2018-05-17 16:08:48 -06:00 |
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leandrohw
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a973cd8833
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Cleaned up the analysis properties
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2018-05-17 12:20:30 -06:00 |
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leandrohw
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1234c37ed6
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Javadoc in datamodels.
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2018-05-17 01:18:38 -06:00 |
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leandrohw
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8b9b3add5b
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Java doc for the remaining parts of the hierarchical simulator.
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2018-05-16 16:12:26 -06:00 |
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leandrohw
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fd99820fa5
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Deleted script to run the hierarchical simulator.
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2018-05-16 16:02:30 -06:00 |
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leandrohw
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91906c7b27
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Javadoc for interpreter.
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2018-05-16 15:56:26 -06:00 |
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leandrohw
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ce5a4da22f
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Java doc in util.
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2018-05-16 15:55:54 -06:00 |
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leandrohw
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7b3d7e2374
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Javadoc for hierarchical states
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2018-05-16 12:09:58 -06:00 |
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leandrohw
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98fe826dba
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Java doc for the simulators.
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2018-05-16 10:23:05 -06:00 |
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leandrohw
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971e92cf7f
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More simple javadoc in analysis.
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2018-05-11 23:01:44 -06:00 |
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leandrohw
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661ccae97f
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Some refactoring of the nodes
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2018-05-11 15:29:29 -06:00 |
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