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iBioSim/prismtest/Circuit0x8E/topModel.xml
LukasBuecherl 2674494894 Working
2023-03-06 12:20:29 +00:00

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<?xml version='1.0' encoding='UTF-8' standalone='no'?>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> kd </ci>
<ci> Ara_AraC_protein </ci>
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</math>
</kineticLaw>
</reaction>
<reaction compartment="Cell" id="IPTG_LacI_protein_degradation_interaction" metaid="iBioSim72" reversible="false" sboTerm="SBO:0000179">
<annotation>
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</annotation>
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<apply>
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<reaction compartment="Cell" id="PhlF_degradation_interaction" metaid="iBioSim73" reversible="false" sboTerm="SBO:0000179">
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</annotation>
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<annotation>
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</kineticLaw>
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<reaction compartment="Cell" id="aTc_TetR_protein_degradation_interaction" metaid="iBioSim74" reversible="false" sboTerm="SBO:0000179">
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<annotation>
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<kineticLaw>
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<apply>
<times/>
<ci> kd </ci>
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</math>
</kineticLaw>
</reaction>
<reaction compartment="Cell" id="Complex_IPTG_LacI_protein" metaid="iBioSim26" reversible="true" sboTerm="SBO:0000177">
<annotation>
<ModelToSBOL xmlns="http://sbolstandard.org/modeltosbol/1.0#">
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<rdf:Bag>
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</annotation>
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<annotation>
<ModelToSBOL xmlns="http://sbolstandard.org/modeltosbol/1.0#">
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<speciesReference constant="true" metaid="iBioSim29" species="LacI_protein" stoichiometry="2">
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</annotation>
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<listOfProducts>
<speciesReference constant="true" metaid="iBioSim27" species="IPTG_LacI_protein" stoichiometry="1">
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<ModelToSBOL xmlns="http://sbolstandard.org/modeltosbol/1.0#">
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<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<minus/>
<apply>
<times/>
<apply>
<times/>
<ci> kc_f </ci>
<apply>
<power/>
<ci> IPTG </ci>
<ci> nc </ci>
</apply>
</apply>
<apply>
<power/>
<ci> LacI_protein </ci>
<ci> nc </ci>
</apply>
</apply>
<apply>
<times/>
<ci> kc_r </ci>
<ci> IPTG_LacI_protein </ci>
</apply>
</apply>
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</kineticLaw>
</reaction>
<reaction compartment="Cell" id="YFP_degradation_interaction" metaid="iBioSim75" reversible="false" sboTerm="SBO:0000179">
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<rdf:Description rdf:about="#">
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<apply>
<times/>
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</reaction>
<reaction compartment="Cell" id="LacI_degradation_interaction" metaid="iBioSim76" reversible="false" sboTerm="SBO:0000179">
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</annotation>
<listOfReactants>
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<kineticLaw>
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<apply>
<times/>
<ci> kd </ci>
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</reaction>
<reaction compartment="Cell" id="Complex_Ara_AraC_protein" metaid="iBioSim32" reversible="true" sboTerm="SBO:0000177">
<annotation>
<ModelToSBOL xmlns="http://sbolstandard.org/modeltosbol/1.0#">
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<rdf:Bag>
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</annotation>
<listOfReactants>
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<annotation>
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<listOfProducts>
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<apply>
<minus/>
<apply>
<times/>
<apply>
<times/>
<ci> kc_f </ci>
<apply>
<power/>
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</apply>
</apply>
<apply>
<power/>
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</apply>
</apply>
<apply>
<times/>
<ci> kc_r </ci>
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</apply>
</apply>
</math>
</kineticLaw>
</reaction>
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</annotation>
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<apply>
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<reaction compartment="Cell" id="BetI_degradation_interaction" metaid="iBioSim78" reversible="false" sboTerm="SBO:0000179">
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</annotation>
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<apply>
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<reaction compartment="Cell" id="AmtR_degradation_interaction" metaid="iBioSim79" reversible="false" sboTerm="SBO:0000179">
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<kineticLaw>
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<apply>
<times/>
<ci> kd </ci>
<ci> AmtR_protein </ci>
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</math>
</kineticLaw>
</reaction>
</listOfReactions>
<listOfEvents/>
</model>
</sbml>
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