iBioSim/docs/Tutorial/case00987.xml

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XML

<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:layout="http://www.sbml.org/sbml/level3/version1/layout/version1" xmlns:comp="http://www.sbml.org/sbml/level3/version1/comp/version1" level="3" version="1" layout:required="false" comp:required="true">
<model id="case00987" name="case00987">
<listOfCompartments>
<compartment sboTerm="SBO:0000410" id="default_compartment" spatialDimensions="3" size="1" constant="true"/>
</listOfCompartments>
<listOfSpecies>
<species id="A" compartment="default_compartment" initialAmount="1" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false"/>
<species id="B" compartment="default_compartment" initialAmount="0" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false"/>
<species id="C" compartment="default_compartment" initialAmount="0" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false"/>
</listOfSpecies>
<listOfParameters>
<parameter id="k1" value="0" constant="false"/>
</listOfParameters>
<listOfReactions>
<reaction id="fast" reversible="true" fast="true">
<listOfReactants>
<speciesReference species="A" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="B" stoichiometry="1" constant="true"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k1 </ci>
<ci> A </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="slow" reversible="true" fast="false">
<listOfReactants>
<speciesReference species="B" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C" stoichiometry="1" constant="true"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k1 </ci>
<ci> B </ci>
</apply>
</math>
</kineticLaw>
</reaction>
</listOfReactions>
<listOfEvents>
<event id="_E0" useValuesFromTriggerTime="true">
<trigger initialValue="true" persistent="true">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<gt/>
<csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
<cn> 0.99 </cn>
</apply>
</math>
</trigger>
<listOfEventAssignments>
<eventAssignment variable="k1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<cn type="integer"> 1 </cn>
</math>
</eventAssignment>
</listOfEventAssignments>
</event>
</listOfEvents>
</model>
</sbml>