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Fixed iBioSim headings

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This commit is contained in:
leandrohw 2017-09-23 22:03:40 -06:00
parent 5ff716fb7c
commit d765c20d4e
43 changed files with 525 additions and 10 deletions
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13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/Analysis.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis;
/**

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/Run.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis;
import java.awt.HeadlessException;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/properties/AdvancedProperties.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.properties;
import java.util.ArrayList;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/properties/AnalysisProperties.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.properties;
import java.io.File;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/properties/AnalysisPropertiesLoader.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.properties;
import java.io.File;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/properties/AnalysisPropertiesWriter.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.properties;
import java.io.File;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/properties/IncrementalProperties.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.properties;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/properties/PropertiesConstants.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.properties;
public class PropertiesConstants {

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/properties/PropertiesUtil.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.properties;
import org.jdom.Element;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/properties/SimulationProperties.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.properties;
import java.util.ArrayList;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/properties/VerificationProperties.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.properties;
import java.util.ArrayList;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/simulation/AbstractSimulator.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.simulation;
import edu.utah.ece.async.ibiosim.dataModels.util.Message;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/simulation/hierarchical/io/HierarchicalCSVWriter.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.simulation.hierarchical.io;
import java.io.BufferedWriter;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/simulation/hierarchical/io/HierarchicalTSDWriter.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.simulation.hierarchical.io;
import java.io.BufferedWriter;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/simulation/hierarchical/math/FunctionDefNode.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.simulation.hierarchical.math;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/simulation/hierarchical/math/NumberNode.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.simulation.hierarchical.math;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/simulation/hierarchical/states/ReactionState.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.simulation.hierarchical.states;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/simulation/hierarchical/util/comp/ModelContainer.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.simulation.hierarchical.util.comp;
import java.util.HashMap;

13
analysis/src/main/java/edu/utah/ece/async/ibiosim/analysis/simulation/hierarchical/util/comp/TriggeredEventNode.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.analysis.simulation.hierarchical.util.comp;
import edu.utah.ece.async.ibiosim.analysis.simulation.hierarchical.math.EventNode;

13
conversion/src/test/java/edu/utah/ece/async/ibiosim/conversion/ModelGeneratorTests.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.conversion;
import java.io.FileNotFoundException;

13
dataModels/src/main/java/edu/utah/ece/async/ibiosim/dataModels/util/Executables.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.dataModels.util;
import java.io.IOException;

4
dataModels/src/main/java/edu/utah/ece/async/ibiosim/dataModels/util/IBioSimPreferences.java
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@ -1,5 +1,5 @@
/*
* Copyright (c) 2012 - 2015, Clark & Parsia, LLC. <http://www.clarkparsia.com>
* Copyright (c) 2012 - 2017, Clark & Parsia, LLC. <http://www.clarkparsia.com>
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
@ -11,7 +11,7 @@
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
*/
package edu.utah.ece.async.ibiosim.dataModels.util;

13
dataModels/src/main/java/edu/utah/ece/async/ibiosim/dataModels/util/Infos.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
/*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.

4
dataModels/src/main/java/edu/utah/ece/async/ibiosim/dataModels/util/PersonInfo.java
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@ -1,5 +1,5 @@
/*
* Copyright (c) 2012 - 2015, Clark & Parsia, LLC. <http://www.clarkparsia.com>
* Copyright (c) 2012 - 2017, Clark & Parsia, LLC. <http://www.clarkparsia.com>
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
@ -11,7 +11,7 @@
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
*/
package edu.utah.ece.async.ibiosim.dataModels.util;

13
dataModels/src/main/java/edu/utah/ece/async/ibiosim/dataModels/util/Validate.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.dataModels.util;
import java.io.IOException;

13
dataModels/src/main/java/edu/utah/ece/async/ibiosim/dataModels/util/observe/BioObservable.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.dataModels.util.observe;
import edu.utah.ece.async.ibiosim.dataModels.util.Message;

13
dataModels/src/main/java/edu/utah/ece/async/ibiosim/dataModels/util/observe/BioObserver.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.dataModels.util.observe;
import edu.utah.ece.async.ibiosim.dataModels.util.Message;

13
dataModels/src/main/java/edu/utah/ece/async/ibiosim/dataModels/util/observe/CoreObservable.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.dataModels.util.observe;
import java.util.ArrayList;

13
dataModels/src/main/java/edu/utah/ece/async/ibiosim/dataModels/util/observe/PanelObservable.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.dataModels.util.observe;
import java.awt.BorderLayout;

13
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/ResourceManager.java
View file

@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.gui;
import java.net.URL;

34
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/analysisView/AnalysisView.java
View file

@ -58,6 +58,8 @@ import javax.swing.JScrollPane;
import javax.swing.JTabbedPane;
import javax.swing.JTextField;
import javax.swing.ListModel;
import javax.swing.event.DocumentEvent;
import javax.swing.event.DocumentListener;
import javax.xml.stream.XMLStreamException;
import org.jdom.Element;
@ -253,6 +255,38 @@ public class AnalysisView extends PanelObservable implements ActionListener, Run
JTextField taskId = new JTextField(simName);
taskId.setEditable(false);
fileStem = new JTextField("", 15);
fileStem.getDocument().addDocumentListener(new DocumentListener()
{
@Override
public void insertUpdate(DocumentEvent e) {
check();
}
@Override
public void removeUpdate(DocumentEvent e) {
check();
}
@Override
public void changedUpdate(DocumentEvent e) {
}
private void check()
{
String stem = fileStem.getText();
if(properties.getListOfTasks().contains(stem))
{
subTaskList.setSelectedItem(stem);
}
else
{
subTaskList.setSelectedItem("(none)");
}
}
});
subTaskList = new JComboBox<String>();
subTaskList.addItem("(none)");

13
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/util/preferences/AnalysisPreferencesTab.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.gui.util.preferences;
import java.awt.BorderLayout;

13
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/util/preferences/GeneralPreferencesTab.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.gui.util.preferences;
import java.awt.Component;

13
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/util/preferences/LearnPreferencesTab.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.gui.util.preferences;
import java.awt.BorderLayout;

13
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/util/preferences/ModelEditorPreferencesTab.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.gui.util.preferences;
import java.awt.BorderLayout;

13
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/util/preferences/ModelPreferencesTab.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.gui.util.preferences;
import java.awt.BorderLayout;

13
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/util/preferences/PartEditorPreferencesTab.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.gui.util.preferences;
import java.awt.Component;

4
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/util/preferences/PreferencesDialog.java
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@ -1,5 +1,5 @@
/*
* Copyright (c) 2012 - 2015, Clark & Parsia, LLC. <http://www.clarkparsia.com>
* Copyright (c) 2012 - 2017, Clark & Parsia, LLC. <http://www.clarkparsia.com>
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
@ -11,7 +11,7 @@
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
*/
package edu.utah.ece.async.ibiosim.gui.util.preferences;

4
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/util/preferences/RegistryPreferencesTab.java
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@ -1,5 +1,5 @@
/*
* Copyright (c) 2012 - 2015, Clark & Parsia, LLC. <http://www.clarkparsia.com>
* Copyright (c) 2012 - 2017, Clark & Parsia, LLC. <http://www.clarkparsia.com>
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
@ -11,7 +11,7 @@
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
*/
package edu.utah.ece.async.ibiosim.gui.util.preferences;

13
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/util/preferences/SynthesisPreferencesTab.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.gui.util.preferences;
import java.awt.BorderLayout;

4
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/util/preferences/UserInfoTab.java
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@ -1,5 +1,5 @@
/*
* Copyright (c) 2012 - 2015, Clark & Parsia, LLC. <http://www.clarkparsia.com>
* Copyright (c) 2012 - 2017, Clark & Parsia, LLC. <http://www.clarkparsia.com>
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
@ -11,7 +11,7 @@
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
*/
package edu.utah.ece.async.ibiosim.gui.util.preferences;

13
learn/src/main/java/edu/utah/ece/async/ibiosim/learn/Learn.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.learn;
import java.io.File;

13
learn/src/test/java/edu/utah/ece/async/ibiosim/learn/LearnTests.java
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@ -1,3 +1,16 @@
/*******************************************************************************
*
* This file is part of iBioSim. Please visit <http://www.async.ece.utah.edu/ibiosim>
* for the latest version of iBioSim.
*
* Copyright (C) 2017 University of Utah
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the Apache License. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online at <http://www.async.ece.utah.edu/ibiosim/License>.
*
*******************************************************************************/
package edu.utah.ece.async.ibiosim.learn;
import static org.junit.Assert.*;