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Update README.md

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Leandro Watanabe 2017-12-13 16:04:33 -07:00 • committed by GitHub
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@ -17,9 +17,15 @@ After building the executable jar, you need to invoke the following command:
where
* ```input``` is an arbitrary SBML file
* ```directory``` is the location of the time-series data
* ```-e``` is a flag to perform parameter estimation. Default is GeneNet.
* ```-l ...``` is a flag to specify which parameters need to be estimated, where the value is a comma separated list of parameter ids (e.g., "p1,p2,p3").
| Required | Description |
| ------------- | ------------- |
| ```input``` | arbitrary SBML file
| ```directory``` | location of the time-series data |
| Optional | Description |
| ------------- | ------------- |
| ```-e``` | perform parameter estimation. Default is GeneNet. |
```-l ...``` |a flag to specify which parameters need to be estimated, where the value is a comma separated list of parameter ids (e.g., "p1,p2,p3") |