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Fix issues with model generation libraries

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This commit is contained in:
Chris Myers 2025-12-23 09:59:23 -07:00
parent d4d40a9084
commit 9de95ab6eb
3 changed files with 40 additions and 35 deletions
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20
conversion/pom.xml
View file

@ -62,23 +62,15 @@
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.apache.jena</groupId> <groupId>org.apache.jena</groupId>
<artifactId>jena-base</artifactId> <artifactId>apache-jena-libs</artifactId>
<version>3.0.0</version> <version>3.0.0</version>
<type>pom</type>
<scope>import</scope>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.apache.jena</groupId> <groupId>xerces</groupId>
<artifactId>jena-arq</artifactId> <artifactId>xercesImpl</artifactId>
<version>3.0.0</version> <version>2.12.2</version>
<exclusions>
<exclusion>
<groupId>xml-apis</groupId>
<artifactId>xml-apis</artifactId>
</exclusion>
<exclusion>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
</exclusion>
</exclusions>
</dependency> </dependency>
</dependencies> </dependencies>
<repositories> <repositories>

6
gui/pom.xml
View file

@ -178,6 +178,12 @@
<artifactId>jdom2</artifactId> <artifactId>jdom2</artifactId>
<version>2.0.6</version> <version>2.0.6</version>
</dependency> </dependency>
<dependency>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
<version>2.12.2</version>
</dependency>
</dependencies> </dependencies>
</project> </project>

49
gui/src/main/java/edu/utah/ece/async/ibiosim/gui/Gui.java
View file

@ -886,28 +886,35 @@ public class Gui implements BioObserver, MouseListener, ActionListener, MouseMot
if (Desktop.isDesktopSupported()) { if (Desktop.isDesktopSupported()) {
Desktop desktop = Desktop.getDesktop(); Desktop desktop = Desktop.getDesktop();
// Set the "About" menu handler if (desktop.isSupported(Desktop.Action.APP_ABOUT)) {
desktop.setAboutHandler(e -> { // Set the "About" menu handler
about(); desktop.setAboutHandler(e -> {
}); about();
});
}
// Set the "Preferences" menu handler if (desktop.isSupported(Desktop.Action.APP_PREFERENCES)) {
desktop.setPreferencesHandler(e -> { // Set the "Preferences" menu handler
PreferencesDialog.showPreferences(Gui.frame); desktop.setPreferencesHandler(e -> {
getFileTree().setExpandibleIcons(!IBioSimPreferences.INSTANCE.isPlusMinusIconsEnabled()); PreferencesDialog.showPreferences(Gui.frame);
if (getSBOLDocument() != null) { getFileTree().setExpandibleIcons(!IBioSimPreferences.INSTANCE.isPlusMinusIconsEnabled());
getSBOLDocument().setDefaultURIprefix(SBOLEditorPreferences.INSTANCE.getUserInfo().getURI().toString()); if (getSBOLDocument() != null) {
} getSBOLDocument().setDefaultURIprefix(SBOLEditorPreferences.INSTANCE.getUserInfo().getURI().toString());
}); }
});
// Set the "Quit" menu handler }
desktop.setQuitHandler((e, response) -> {
exit(); if (desktop.isSupported(Desktop.Action.APP_QUIT_HANDLER)) {
// If we have returned from the above call the user has decided not to quit // Set the "Quit" menu handler
response.cancelQuit(); desktop.setQuitHandler((e, response) -> {
// Perform cleanup before exiting exit();
//response.performQuit(); // or response.cancelQuit(); // If we have returned from the above call the user has decided not to quit
}); response.cancelQuit();
// Perform cleanup before exiting
//response.performQuit(); // or response.cancelQuit();
});
}
} else { } else {
edit.addSeparator(); edit.addSeparator();
edit.add(pref); edit.add(pref);