This changes are me trying to re-install previous commit before messing
up
This commit is contained in:
Pedro Fontanarrosa
parent
c68526ca98
commit
703b6e9e1a
4 changed files with 2128 additions and 1706 deletions
433
gui/.xml
Normal file
433
gui/.xml
Normal file
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<?xml version='1.0' encoding='UTF-8'?>
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<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:sbh="http://wiki.synbiohub.org/wiki/Terms/synbiohub#" xmlns:sbol="http://sbols.org/v2#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:ns0="http://cellocad.org/Terms/cello#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:om="http://www.ontology-of-units-of-measure.org/resource/om-2/" xmlns:dc="http://purl.org/dc/elements/1.1/">
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<sbol:ComponentDefinition rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BBa_B0064_rbs/1">
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<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BBa_B0064_rbs"/>
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<sbol:displayId>BBa_B0064_rbs</sbol:displayId>
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<sbol:version>1</sbol:version>
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<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
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<dcterms:title>BBa_B0064_rbs</dcterms:title>
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<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
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<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BBa_B0064_rbs/1"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000139"/>
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<sbol:sequence rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BBa_B0064_rbs_sequence/1"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pCONST/1">
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<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pCONST"/>
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<sbol:displayId>pCONST</sbol:displayId>
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<sbol:version>1</sbol:version>
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<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
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<dcterms:title>pCONST</dcterms:title>
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<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
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<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pCONST/1"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000167"/>
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<sbol:sequence rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pCONST_sequence/1"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P21_terminator/1">
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<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P21_terminator"/>
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<sbol:displayId>L3S2P21_terminator</sbol:displayId>
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<sbol:version>1</sbol:version>
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<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
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<dcterms:title>L3S2P21_terminator</dcterms:title>
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<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
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<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P21_terminator/1"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000141"/>
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<sbol:sequence rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P21_terminator_sequence/1"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="http://www.async.utah.edu/Sensor/1">
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<sbol:persistentIdentity rdf:resource="http://www.async.utah.edu/Sensor"/>
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<sbol:displayId>Sensor</sbol:displayId>
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<sbol:version>1</sbol:version>
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<prov:wasGeneratedBy rdf:resource="http://www.async.utah.edu/Sensor_SBOLDesignerActivity/1"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000804"/>
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<sbol:component>
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<sbol:Component rdf:about="http://www.async.utah.edu/Sensor/Gen_Component/1">
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<sbol:persistentIdentity rdf:resource="http://www.async.utah.edu/Sensor/Gen_Component"/>
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<sbol:displayId>Gen_Component</sbol:displayId>
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<sbol:version>1</sbol:version>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
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</sbol:Component>
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</sbol:component>
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<sbol:sequenceAnnotation>
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<sbol:SequenceAnnotation rdf:about="http://www.async.utah.edu/Sensor/Sensor_SequenceAnnotation/1">
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<sbol:persistentIdentity rdf:resource="http://www.async.utah.edu/Sensor/Sensor_SequenceAnnotation"/>
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<sbol:displayId>Sensor_SequenceAnnotation</sbol:displayId>
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<sbol:version>1</sbol:version>
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<sbol:location>
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<sbol:Range rdf:about="http://www.async.utah.edu/Sensor/Sensor_SequenceAnnotation/Sensor_SequenceAnnotation_Range/1">
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<sbol:persistentIdentity rdf:resource="http://www.async.utah.edu/Sensor/Sensor_SequenceAnnotation/Sensor_SequenceAnnotation_Range"/>
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<sbol:displayId>Sensor_SequenceAnnotation_Range</sbol:displayId>
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<sbol:version>1</sbol:version>
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<sbol:start>1</sbol:start>
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<sbol:end>1077</sbol:end>
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<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
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</sbol:Range>
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</sbol:location>
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<sbol:component rdf:resource="http://www.async.utah.edu/Sensor/Gen_Component/1"/>
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</sbol:SequenceAnnotation>
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</sbol:sequenceAnnotation>
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<sbol:sequence rdf:resource="http://www.async.utah.edu/SensorSequence/1"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ/1">
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<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ"/>
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<sbol:displayId>RiboJ</sbol:displayId>
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<sbol:version>1</sbol:version>
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<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
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<dcterms:title>RiboJ</dcterms:title>
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<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
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<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ/1"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0001977"/>
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<sbol:sequence rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ_sequence/1"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC/1">
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<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC"/>
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<sbol:displayId>AraC</sbol:displayId>
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<sbol:version>1</sbol:version>
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<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
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<dcterms:title>AraC</dcterms:title>
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<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
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<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC/1"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000316"/>
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<sbol:sequence rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sequence/1"/>
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</sbol:ComponentDefinition>
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<sbol:ComponentDefinition rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1">
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<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor"/>
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<sbol:displayId>AraC_sensor</sbol:displayId>
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<sbol:version>1</sbol:version>
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<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
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<dcterms:title>AraC_sensor</dcterms:title>
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<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
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<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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<ns0:gateType>input_sensor</ns0:gateType>
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<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
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<sbol:type rdf:resource="http://www.biopax.org/release/biopax-level3.owl#DnaRegion"/>
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<sbol:role rdf:resource="http://identifiers.org/so/SO:0000804"/>
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<sbol:component>
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<sbol:Component rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/BBa_B0064_rbs/1">
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<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/BBa_B0064_rbs"/>
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<sbol:displayId>BBa_B0064_rbs</sbol:displayId>
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<sbol:version>1</sbol:version>
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<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BBa_B0064_rbs/1"/>
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</sbol:Component>
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</sbol:component>
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<sbol:component>
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<sbol:Component rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/AraC/1">
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<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/AraC"/>
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<sbol:displayId>AraC</sbol:displayId>
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<sbol:version>1</sbol:version>
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<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC/1"/>
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</sbol:Component>
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</sbol:component>
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<sbol:component>
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<sbol:Component rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/pCONST/1">
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<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/pCONST"/>
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<sbol:displayId>pCONST</sbol:displayId>
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<sbol:version>1</sbol:version>
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<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pCONST/1"/>
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</sbol:Component>
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</sbol:component>
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<sbol:component>
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<sbol:Component rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/RiboJ/1">
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||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/RiboJ"/>
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<sbol:displayId>RiboJ</sbol:displayId>
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<sbol:version>1</sbol:version>
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||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ/1"/>
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</sbol:Component>
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</sbol:component>
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<sbol:component>
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<sbol:Component rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/L3S2P21_terminator/1">
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||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/L3S2P21_terminator"/>
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<sbol:displayId>L3S2P21_terminator</sbol:displayId>
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<sbol:version>1</sbol:version>
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<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
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<sbol:access rdf:resource="http://sbols.org/v2#public"/>
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<sbol:definition rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P21_terminator/1"/>
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</sbol:Component>
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</sbol:component>
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<sbol:sequenceAnnotation>
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<sbol:SequenceAnnotation rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation3/1">
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||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation3"/>
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<sbol:displayId>annotation3</sbol:displayId>
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<sbol:version>1</sbol:version>
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||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
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||||
<sbol:location>
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||||
<sbol:Range rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation3/range/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation3/range"/>
|
||||
<sbol:displayId>range</sbol:displayId>
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||||
<sbol:version>1</sbol:version>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
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||||
<sbol:start>138</sbol:start>
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||||
<sbol:end>1016</sbol:end>
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||||
<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
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||||
</sbol:Range>
|
||||
</sbol:location>
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||||
<sbol:component rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/AraC/1"/>
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||||
</sbol:SequenceAnnotation>
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||||
</sbol:sequenceAnnotation>
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||||
<sbol:sequenceAnnotation>
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||||
<sbol:SequenceAnnotation rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation1/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation1"/>
|
||||
<sbol:displayId>annotation1</sbol:displayId>
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||||
<sbol:version>1</sbol:version>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
|
||||
<sbol:location>
|
||||
<sbol:Range rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation1/range/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation1/range"/>
|
||||
<sbol:displayId>range</sbol:displayId>
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||||
<sbol:version>1</sbol:version>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
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||||
<sbol:start>51</sbol:start>
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||||
<sbol:end>125</sbol:end>
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||||
<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
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||||
</sbol:Range>
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||||
</sbol:location>
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||||
<sbol:component rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/RiboJ/1"/>
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</sbol:SequenceAnnotation>
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</sbol:sequenceAnnotation>
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<sbol:sequenceAnnotation>
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||||
<sbol:SequenceAnnotation rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation2/1">
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||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation2"/>
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||||
<sbol:displayId>annotation2</sbol:displayId>
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||||
<sbol:version>1</sbol:version>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
|
||||
<sbol:location>
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||||
<sbol:Range rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation2/range/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation2/range"/>
|
||||
<sbol:displayId>range</sbol:displayId>
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||||
<sbol:version>1</sbol:version>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
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||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
|
||||
<sbol:start>126</sbol:start>
|
||||
<sbol:end>137</sbol:end>
|
||||
<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
|
||||
</sbol:Range>
|
||||
</sbol:location>
|
||||
<sbol:component rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/BBa_B0064_rbs/1"/>
|
||||
</sbol:SequenceAnnotation>
|
||||
</sbol:sequenceAnnotation>
|
||||
<sbol:sequenceAnnotation>
|
||||
<sbol:SequenceAnnotation rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation0/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation0"/>
|
||||
<sbol:displayId>annotation0</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
|
||||
<sbol:location>
|
||||
<sbol:Range rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation0/range/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation0/range"/>
|
||||
<sbol:displayId>range</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
|
||||
<sbol:start>1</sbol:start>
|
||||
<sbol:end>50</sbol:end>
|
||||
<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
|
||||
</sbol:Range>
|
||||
</sbol:location>
|
||||
<sbol:component rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/pCONST/1"/>
|
||||
</sbol:SequenceAnnotation>
|
||||
</sbol:sequenceAnnotation>
|
||||
<sbol:sequenceAnnotation>
|
||||
<sbol:SequenceAnnotation rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation4/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation4"/>
|
||||
<sbol:displayId>annotation4</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
|
||||
<sbol:location>
|
||||
<sbol:Range rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation4/range/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/annotation4/range"/>
|
||||
<sbol:displayId>range</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/1"/>
|
||||
<sbol:start>1017</sbol:start>
|
||||
<sbol:end>1077</sbol:end>
|
||||
<sbol:orientation rdf:resource="http://sbols.org/v2#inline"/>
|
||||
</sbol:Range>
|
||||
</sbol:location>
|
||||
<sbol:component rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor/L3S2P21_terminator/1"/>
|
||||
</sbol:SequenceAnnotation>
|
||||
</sbol:sequenceAnnotation>
|
||||
<sbol:sequence rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor_sequence/1"/>
|
||||
</sbol:ComponentDefinition>
|
||||
<sbol:Sequence rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ_sequence/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ_sequence"/>
|
||||
<sbol:displayId>RiboJ_sequence</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
|
||||
<dcterms:title>RiboJ_sequence</dcterms:title>
|
||||
<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ_sequence/1"/>
|
||||
<sbol:elements>AGCTGTCACCGGATGTGCTTTCCGGTCTGATGAGTCCGTGAGGACGAAACAGCCTCTACAAATAATTTTGTTTAA</sbol:elements>
|
||||
<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
|
||||
</sbol:Sequence>
|
||||
<sbol:Sequence rdf:about="http://www.async.utah.edu/SensorSequence/1">
|
||||
<sbol:persistentIdentity rdf:resource="http://www.async.utah.edu/SensorSequence"/>
|
||||
<sbol:displayId>SensorSequence</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<prov:wasGeneratedBy rdf:resource="http://www.async.utah.edu/Sensor_SBOLDesignerActivity/1"/>
|
||||
<sbol:elements>GATAAGTCCCTAACTTTTACAGCTAGCTCAGTCCTAGGTATTATGCTAGCAGCTGTCACCGGATGTGCTTTCCGGTCTGATGAGTCCGTGAGGACGAAACAGCCTCTACAAATAATTTTGTTTAAAAAGAGGGGAAAatggctgaagcgcaaaatgatcccctgctgccgggatactcgtttaatgcccatctggtggcgggtttaacgccgattgaggccaacggttatctcgatttttttatcgaccgaccgctgggaatgaaaggttatattctcaatctcaccattcgcggtcagggggtggtgaaaaatcagggacgagaatttgtttgccgaccgggtgatattttgctgttcccgccaggagagattcatcactacggtcgtcatccggaggctcgcgaatggtatcaccagtgggtttactttcgtccgcgcgcctactggcatgaatggcttaactggccgtcaatatttgccaatacggggttctttcgcccggatgaagcgcaccagccgcatttcagcgacctgtttgggcaaatcattaacgccgggcaaggggaagggcgctattcggagctgctggcgataaatctgcttgagcaattgttactgcggcgcatggaagcgattaacgagtcgctccatccaccgatggataatcgggtacgcgaggcttgtcagtacatcagcgatcacctggcagacagcaattttgatatcgccagcgtcgcacagcatgtttgcttgtcgccgtcgcgtctgtcacatcttttccgccagcagttagggattagcgtcttaagctggcgcgaggaccaacgtatcagccaggcgaagctgcttttgagcaccacccggatgcctatcgccaccgtcggtcgcaatgttggttttgacgatcaactctatttctcgcgggtatttaaaaaatgcaccggggccagcccgagcgagttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaCTCGGTACCAAATTCCAGAAAAGAGGCCTCCCGAAAGGGGGGCCTTTTTTCGTTTTGGTCC</sbol:elements>
|
||||
<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
|
||||
</sbol:Sequence>
|
||||
<sbol:Sequence rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BBa_B0064_rbs_sequence/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BBa_B0064_rbs_sequence"/>
|
||||
<sbol:displayId>BBa_B0064_rbs_sequence</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
|
||||
<dcterms:title>BBa_B0064_rbs_sequence</dcterms:title>
|
||||
<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BBa_B0064_rbs_sequence/1"/>
|
||||
<sbol:elements>AAAGAGGGGAAA</sbol:elements>
|
||||
<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
|
||||
</sbol:Sequence>
|
||||
<sbol:Sequence rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pCONST_sequence/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pCONST_sequence"/>
|
||||
<sbol:displayId>pCONST_sequence</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
|
||||
<dcterms:title>pCONST_sequence</dcterms:title>
|
||||
<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pCONST_sequence/1"/>
|
||||
<sbol:elements>GATAAGTCCCTAACTTTTACAGCTAGCTCAGTCCTAGGTATTATGCTAGC</sbol:elements>
|
||||
<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
|
||||
</sbol:Sequence>
|
||||
<sbol:Sequence rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P21_terminator_sequence/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P21_terminator_sequence"/>
|
||||
<sbol:displayId>L3S2P21_terminator_sequence</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
|
||||
<dcterms:title>L3S2P21_terminator_sequence</dcterms:title>
|
||||
<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P21_terminator_sequence/1"/>
|
||||
<sbol:elements>CTCGGTACCAAATTCCAGAAAAGAGGCCTCCCGAAAGGGGGGCCTTTTTTCGTTTTGGTCC</sbol:elements>
|
||||
<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
|
||||
</sbol:Sequence>
|
||||
<sbol:Sequence rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sequence/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sequence"/>
|
||||
<sbol:displayId>AraC_sequence</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
|
||||
<dcterms:title>AraC_sequence</dcterms:title>
|
||||
<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sequence/1"/>
|
||||
<sbol:elements>atggctgaagcgcaaaatgatcccctgctgccgggatactcgtttaatgcccatctggtggcgggtttaacgccgattgaggccaacggttatctcgatttttttatcgaccgaccgctgggaatgaaaggttatattctcaatctcaccattcgcggtcagggggtggtgaaaaatcagggacgagaatttgtttgccgaccgggtgatattttgctgttcccgccaggagagattcatcactacggtcgtcatccggaggctcgcgaatggtatcaccagtgggtttactttcgtccgcgcgcctactggcatgaatggcttaactggccgtcaatatttgccaatacggggttctttcgcccggatgaagcgcaccagccgcatttcagcgacctgtttgggcaaatcattaacgccgggcaaggggaagggcgctattcggagctgctggcgataaatctgcttgagcaattgttactgcggcgcatggaagcgattaacgagtcgctccatccaccgatggataatcgggtacgcgaggcttgtcagtacatcagcgatcacctggcagacagcaattttgatatcgccagcgtcgcacagcatgtttgcttgtcgccgtcgcgtctgtcacatcttttccgccagcagttagggattagcgtcttaagctggcgcgaggaccaacgtatcagccaggcgaagctgcttttgagcaccacccggatgcctatcgccaccgtcggtcgcaatgttggttttgacgatcaactctatttctcgcgggtatttaaaaaatgcaccggggccagcccgagcgagttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataa</sbol:elements>
|
||||
<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
|
||||
</sbol:Sequence>
|
||||
<sbol:Sequence rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor_sequence/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor_sequence"/>
|
||||
<sbol:displayId>AraC_sensor_sequence</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<prov:wasGeneratedBy rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
|
||||
<dcterms:title>AraC_sensor_sequence</dcterms:title>
|
||||
<dcterms:created>2019-06-06T23:37:10.666Z</dcterms:created>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC_sensor_sequence/1"/>
|
||||
<sbol:elements>GATAAGTCCCTAACTTTTACAGCTAGCTCAGTCCTAGGTATTATGCTAGCAGCTGTCACCGGATGTGCTTTCCGGTCTGATGAGTCCGTGAGGACGAAACAGCCTCTACAAATAATTTTGTTTAAAAAGAGGGGAAAatggctgaagcgcaaaatgatcccctgctgccgggatactcgtttaatgcccatctggtggcgggtttaacgccgattgaggccaacggttatctcgatttttttatcgaccgaccgctgggaatgaaaggttatattctcaatctcaccattcgcggtcagggggtggtgaaaaatcagggacgagaatttgtttgccgaccgggtgatattttgctgttcccgccaggagagattcatcactacggtcgtcatccggaggctcgcgaatggtatcaccagtgggtttactttcgtccgcgcgcctactggcatgaatggcttaactggccgtcaatatttgccaatacggggttctttcgcccggatgaagcgcaccagccgcatttcagcgacctgtttgggcaaatcattaacgccgggcaaggggaagggcgctattcggagctgctggcgataaatctgcttgagcaattgttactgcggcgcatggaagcgattaacgagtcgctccatccaccgatggataatcgggtacgcgaggcttgtcagtacatcagcgatcacctggcagacagcaattttgatatcgccagcgtcgcacagcatgtttgcttgtcgccgtcgcgtctgtcacatcttttccgccagcagttagggattagcgtcttaagctggcgcgaggaccaacgtatcagccaggcgaagctgcttttgagcaccacccggatgcctatcgccaccgtcggtcgcaatgttggttttgacgatcaactctatttctcgcgggtatttaaaaaatgcaccggggccagcccgagcgagttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaCTCGGTACCAAATTCCAGAAAAGAGGCCTCCCGAAAGGGGGGCCTTTTTTCGTTTTGGTCC</sbol:elements>
|
||||
<sbol:encoding rdf:resource="http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html"/>
|
||||
</sbol:Sequence>
|
||||
<prov:Activity rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity"/>
|
||||
<sbol:displayId>CelloUCF2sbol_Activity</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<dcterms:title>Cello UCF to SBOL conversion</dcterms:title>
|
||||
<dcterms:description>Conversion of the Cello UCF parts and metadata to SBOL 2 documents.</dcterms:description>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
|
||||
<prov:endedAtTime>2019-06-06T20:37:10.698-03:00</prov:endedAtTime>
|
||||
<prov:qualifiedAssociation>
|
||||
<prov:Association rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/association/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/association"/>
|
||||
<sbol:displayId>association</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
|
||||
<prov:agent rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2SBOL/1"/>
|
||||
</prov:Association>
|
||||
</prov:qualifiedAssociation>
|
||||
<prov:qualifiedUsage>
|
||||
<prov:Usage rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/UCF_file/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/UCF_file"/>
|
||||
<sbol:displayId>UCF_file</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2sbol_Activity/1"/>
|
||||
<prov:entity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/attachment_9634265c435b4455b67185f17a0dd4bc/1"/>
|
||||
</prov:Usage>
|
||||
</prov:qualifiedUsage>
|
||||
</prov:Activity>
|
||||
<prov:Activity rdf:about="http://www.async.utah.edu/Sensor_SBOLDesignerActivity/1">
|
||||
<sbol:persistentIdentity rdf:resource="http://www.async.utah.edu/Sensor_SBOLDesignerActivity"/>
|
||||
<sbol:displayId>Sensor_SBOLDesignerActivity</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<dc:creator>Pedro Fontanarrosa</dc:creator>
|
||||
<prov:endedAtTime>2019-09-15T20:36:12.295-03:00</prov:endedAtTime>
|
||||
<prov:qualifiedAssociation>
|
||||
<prov:Association rdf:about="http://www.async.utah.edu/Sensor_SBOLDesignerActivity/Association/1">
|
||||
<sbol:persistentIdentity rdf:resource="http://www.async.utah.edu/Sensor_SBOLDesignerActivity/Association"/>
|
||||
<sbol:displayId>Association</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<prov:hadRole rdf:resource="http://sbols.org/v2#sequenceEditor"/>
|
||||
<prov:agent rdf:resource="https://synbiohub.org/public/SBOL_Software/SBOLDesigner/3.0"/>
|
||||
</prov:Association>
|
||||
</prov:qualifiedAssociation>
|
||||
</prov:Activity>
|
||||
<prov:Agent rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2SBOL/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2SBOL"/>
|
||||
<sbol:displayId>CelloUCF2SBOL</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<dcterms:title>Cello UCF to SBOL</dcterms:title>
|
||||
<dcterms:description>A script to convert Cello UCF parts and metadata to SBOL 2 documents.</dcterms:description>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<dc:creator>Prashant Vaidyanathan</dc:creator>
|
||||
<dc:creator>Chris J. Myers</dc:creator>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/CelloUCF2SBOL/1"/>
|
||||
<dc:source rdf:resource="https://github.com/MyersResearchGroup/UCF2SBOL"/>
|
||||
</prov:Agent>
|
||||
<sbol:Attachment rdf:about="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/attachment_9634265c435b4455b67185f17a0dd4bc/1">
|
||||
<sbol:persistentIdentity rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/attachment_9634265c435b4455b67185f17a0dd4bc"/>
|
||||
<sbol:displayId>attachment_9634265c435b4455b67185f17a0dd4bc</sbol:displayId>
|
||||
<sbol:version>1</sbol:version>
|
||||
<dcterms:title>Eco1C1G1T1-synbiohub.UCF.json</dcterms:title>
|
||||
<sbh:ownedBy rdf:resource="https://synbiohub.programmingbiology.org/user/myers"/>
|
||||
<sbh:topLevel rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/attachment_9634265c435b4455b67185f17a0dd4bc/1"/>
|
||||
<sbol:source rdf:resource="https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/attachment_9634265c435b4455b67185f17a0dd4bc/1/download"/>
|
||||
<sbol:format rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
|
||||
<sbol:size>3570439</sbol:size>
|
||||
<sbol:hash>57292cc1b8f9be5abbc7a6e6824fdba12f35fb18</sbol:hash>
|
||||
</sbol:Attachment>
|
||||
</rdf:RDF>
|
||||
Loading…
Add table
Add a link
Reference in a new issue