krlhBlupine/iBioSim
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Updated iBioSim scripts to deal with DYLD_LIBRARY_PATH being dropped.

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Updated GeneNet.mac64 to produce method.dot as well as method.gcm
This commit is contained in:
cjmyers 2016-08-31 01:56:02 +00:00
parent 1d70d0fa3f
commit 64207f391c
2 changed files with 22 additions and 18 deletions
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19
bin/iBioSim.linux64
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@ -1,12 +1,13 @@
#!/bin/sh
#
source detect-java.sh
if [ -z "$JAVA_HOME" ]; then
echo "Must install Java JDK Version 1.7 or later"
exit
fi
if [ -z "$BIOSIM" ]; then
export BIOSIM=$PWD/..
fi
export PATH=$BIOSIM/bin:$PATH
export LD_LIBRARY_PATH=$BIOSIM/lib64:$LD_LIBRARY_PATH
CLASSPATH=$BIOSIM/gui/dist/classes
for jarFile in $BIOSIM/gui/lib/*.jar
do
CLASSPATH=$CLASSPATH:$jarFile
done
exec java -Xmx2048M -Xms2048M -XX:+UseSerialGC -classpath $CLASSPATH main.Gui
exec java -Xmx2048M -Xms2048M -XX:+UseSerialGC -jar iBioSim.jar

21
bin/iBioSim.mac64
View file

@ -1,12 +1,15 @@
#!/bin/sh
#
# run-time wrapper for BioSim gui
cd -- "$(dirname "$0")"
if [ -z "$BIOSIM" ]; then
export BIOSIM=$PWD/..
fi
source $BIOSIM/bin/detect-java.sh
if [ -z "$JAVA_HOME" ]; then
echo "Must install Java JDK Version 1.7 or later"
exit
fi
export PATH=$BIOSIM/bin:$PATH
export DYLD_LIBRARY_PATH=$BIOSIM/lib64:$DYLD_LIBRARY_PATH
CLASSPATH=$BIOSIM/gui/dist/classes:$BIOSIM/gui
export DDLD_LIBRARY_PATH=$BIOSIM/lib64:$DDLD_LIBRARY_PATH
for jarFile in $BIOSIM/gui/lib/*.jar
do
CLASSPATH=$CLASSPATH:$jarFile
done
exec java -Xmx2048M -Xms2048M -XX:+UseSerialGC -classpath $CLASSPATH -Dapple.laf.useScreenMenuBar=true -Xdock:name="iBioSim" -Xdock:icon=$BIOSIM/gui/icons/iBioSim.jpg main.Gui
exec java -Xmx2048M -Xms2048M -Djava.library.path=$BIOSIM/lib64 -XX:+UseSerialGC -Dapple.laf.useScreenMenuBar=true -Xdock:name="iBioSim" -Xdock:icon=$BIOSIM/gui/icons/iBioSim.jpg -jar iBioSim.jar