2022-01-18 13:36:06 -07:00
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FROM ubuntu:18.04
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2022-01-18 12:51:55 -07:00
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2022-01-18 13:36:06 -07:00
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LABEL base_image="ubuntu:18.04"
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2022-01-18 12:51:55 -07:00
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LABEL version="1.0.0"
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LABEL software="bioSimAPI"
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LABEL software.version="1.0.0"
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LABEL about.summary="API for SynBioHub/SBOLCanvas communication with iBioSim"
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LABEL about.home="https://github.com/MyersResearchGroup/iBioSim"
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LABEL about.documentation="https://github.com/MyersResearchGroup/iBioSim"
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LABEL about.license_file="https://github.com/MyersResearchGroup/iBioSim/blob/master/LICENSE.txt"
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LABEL about.license="Apache-2.0"
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LABEL about.tags="kinetic modeling,dynamical simulation,systems biology,biochemical networks,SBML,SED-ML,COMBINE,OMEX,BioSimulators"
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LABEL maintainer="Chris Myers <chris.myers@colorado.edu>"
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# Install requirements
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RUN apt-get update --fix-missing \
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&& DEBIAN_FRONTEND=noninteractive \
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2022-01-18 13:36:06 -07:00
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&& apt-get install -y maven \
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&& apt-get install python3.7 -y \
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&& apt-get install python3-pip -y \
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&& apt install openjdk-8-jdk -y
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2022-01-18 12:51:55 -07:00
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# Build iBioSim
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2022-01-26 11:54:06 -07:00
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WORKDIR /iBioSim
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2022-01-26 11:57:49 -07:00
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COPY . .
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RUN mvn package -Dmaven.javadoc.skip=true
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2022-01-26 11:54:06 -07:00
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WORKDIR /
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2022-01-18 12:51:55 -07:00
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RUN apt-get -y install build-essential \
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&& apt-get -y install dos2unix \
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&& apt-get -y install libxml2-dev
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# Build reb2sac
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2022-01-26 15:49:15 -07:00
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WORKDIR iBioSim/Dependencies
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RUN chmod +x newbuild.sh \
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&& dos2unix newbuild.sh \
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&& sh newbuild.sh
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WORKDIR /
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ENV LC_ALL=C.UTF-8
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ENV LANG=C.UTF-8
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